Result for Job: 100000002

Prediction by DISPLAR - DNA-Interaction Site Prediction from a List of Adjacent Residues


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The predicted interface residues are (shown as residueID:chainID, separated by comma)

116:A, 117:A, 118:A, 119:A, 120:A, 121:A, 122:A, 123:A, 277:A, 280:A

Raw result

Submission name: DISPLARtest 
Job submitted  : Fri Dec 30 14:42:01 EST 2011
Job done       : Fri Dec 30 14:43:43 EST 2011

Prediction by DISPLAR - DNA-Interaction Site Prediction from a List of Adjacent Residues
Column 1: AA (Amino Acid code)
Column 2: Ch (Chain ID)
Column 3: AA# (Amino Acid number)
Column 4: Prediction of whether the residue contacts DNA
	  (P = Positive; N = Negative; - = Burried and not predicted)
*************************************************************************
AA Ch  AA#  Prediction
S  A   94         N
S  A   95         N
S  A   96         N
V  A   97         N
P  A   98         N
S  A   99         N
Q  A  100         N
K  A  101         N
T  A  102         N
Y  A  103         N
Q  A  104         N
G  A  105         N
S  A  106         N
Y  A  107         N
G  A  108         N
F  A  109         -
R  A  110         N
L  A  111         -
G  A  112         N
F  A  113         -
L  A  114         N
H  A  115         N
S  A  116         P
G  A  117         P
T  A  118         P
A  A  119         P
K  A  120         P
S  A  121         P
V  A  122         P
T  A  123         P
C  A  124         -
T  A  125         -
Y  A  126         N
S  A  127         -
P  A  128         N
A  A  129         N
L  A  130         N
N  A  131         N
K  A  132         N
M  A  133         -
F  A  134         -
C  A  135         -
Q  A  136         N
L  A  137         N
A  A  138         N
K  A  139         -
T  A  140         N
C  A  141         -
P  A  142         -
V  A  143         -
Q  A  144         N
L  A  145         -
W  A  146         N
V  A  147         N
D  A  148         N
S  A  149         N
T  A  150         N
P  A  151         N
P  A  152         N
P  A  153         N
G  A  154         N
T  A  155         -
R  A  156         N
V  A  157         -
R  A  158         N
A  A  159         -
M  A  160         N
A  A  161         -
I  A  162         -
Y  A  163         -
K  A  164         N
Q  A  165         N
S  A  166         N
Q  A  167         N
H  A  168         N
M  A  169         N
T  A  170         N
E  A  171         N
V  A  172         N
V  A  173         -
R  A  174         N
R  A  175         N
C  A  176         -
P  A  177         N
H  A  178         N
H  A  179         N
E  A  180         N
R  A  181         N
C  A  182         N
S  A  183         N
D  A  184         N
S  A  185         N
D  A  186         N
G  A  187         N
L  A  188         N
A  A  189         -
P  A  190         N
P  A  191         N
Q  A  192         N
H  A  193         -
L  A  194         -
I  A  195         -
R  A  196         N
V  A  197         -
E  A  198         N
G  A  199         N
N  A  200         N
L  A  201         N
R  A  202         N
V  A  203         -
E  A  204         N
Y  A  205         N
L  A  206         N
D  A  207         N
D  A  208         N
R  A  209         N
N  A  210         N
T  A  211         N
F  A  212         N
R  A  213         N
H  A  214         N
S  A  215         -
V  A  216         -
V  A  217         N
V  A  218         -
P  A  219         -
Y  A  220         N
E  A  221         N
P  A  222         N
P  A  223         N
E  A  224         N
V  A  225         N
G  A  226         N
S  A  227         N
D  A  228         N
C  A  229         -
T  A  230         -
T  A  231         N
I  A  232         -
H  A  233         N
Y  A  234         -
N  A  235         -
Y  A  236         -
M  A  237         N
C  A  238         -
N  A  239         N
S  A  240         N
S  A  241         N
C  A  242         N
M  A  243         N
G  A  244         N
G  A  245         N
M  A  246         -
N  A  247         N
R  A  248         N
R  A  249         N
P  A  250         N
I  A  251         -
L  A  252         -
T  A  253         -
I  A  254         -
I  A  255         -
T  A  256         -
L  A  257         -
E  A  258         N
D  A  259         N
S  A  260         N
S  A  261         N
G  A  262         N
N  A  263         N
L  A  264         N
L  A  265         N
G  A  266         -
R  A  267         N
N  A  268         -
S  A  269         N
F  A  270         -
E  A  271         -
V  A  272         -
R  A  273         N
V  A  274         -
C  A  275         N
A  A  276         N
C  A  277         P
P  A  278         -
G  A  279         -
R  A  280         P
D  A  281         N
R  A  282         N
R  A  283         N
T  A  284         N
E  A  285         N
E  A  286         N
E  A  287         N
N  A  288         N
L  A  289         N
R  A  290         N
K  A  291         N
K  A  292         N
G  A  293         N
E  A  294         N
P  A  295         N
H  A  296         N
H  A  297         N
------------------------------------------------------------------------
The positive predictions above were from a clustering process.
Other clusters may have been filtered. Filtered clusters, if any,
are appended here for your information.
Cluster 1 (confid=3)
117 118 119 120 121 122 123 277 116 280 
Cluster 2 (confid=1)
167 247 249 250 
TOTAL CLUSTERS 2, min_confid=1
FILTERED CLUSTERS: 2 
*************************************************************************
If there is no prediction printed above this asterisks line, you should 
go back and check your submission input. The structure must be in 
PDB format and chain IDs of protein must be entered.

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